rs48079606 SNP Detail

Summary

• ID
  rs48079606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:22384403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTGTCTT GAAAGTCCCC GTGACCTTTA GCAGCCCAGA
  CAATATTAAA AGGTCTAAAG CAATCCTGAG ACTCAAGACA ATCAATCTCT TTAACTGTGA
  R
  CCTCTAGAAA ATCATAGAAT AAATATTCCC TTTCCAAAAT GAAGAAATCG GAGCATAAAA
  ATAAAAGCAA AGGAAGCCTG CAGCTAGCAG GGAAAACAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148022024	ENSMUSSNP4588033	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48079606					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:22384403 () rs orientation: forward

Symbol	Name	Function Class
D5Mit72	DNA segment, Chr 5, Massachusetts Institute of Technology 72	117 bp proximal
D5Mit227	DNA segment, Chr 5, Massachusetts Institute of Technology 227	147 bp proximal
Gm54324	predicted gene, 54324	within coordinates
Reln	reelin	within coordinates