rs48080340 SNP Detail

Summary

• ID
  rs48080340
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89603085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTATTGAT AATTATGTTC
  TTAGTAACTG TAAAGCTGCA GCAATAGTTG GTTCCTCTTA CTTACTTTGG TGTGGGAAGA
  GGACCTGGGA AGGTCAGCTG CAGGTTAGCG CTGCTTCTGT TTCAGTTCTT GGGAAAGAAC
  ATGGATCAGC CAGCAAGAAC TGCCTCTGCA CGTCTTGGGC CAGCTGAAGT GTCTGGTTTT
  S
  TATGACTTGG TAGATTTCCT AAGTCAGTTT CCCCGAGATA AACCTAGTTC CTAAGAGGGA
  GAACTTTGTG TTGTGGCACA GCGGGTTTAG GCCCAGTTTG GAAACTGGAT CCAGTTTCCA
  AAAGACAGCT TCAGATTACT GGCTCTTAGG AAAGGTCAAG TGTCTTTAAA AAACTGATTT
  AAGTAGGGTT TCTTGTGGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61194478	NES16707131	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48080340					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194478	NES16707131	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89603085 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	391 bp proximal
Rr614259	regulatory region 614259	488 bp proximal