rs48080626 SNP Detail

Summary

• ID
  rs48080626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88185296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATCCTGT GACAGGGGAG
  GCGTTCCAGT GATTCATTGG GGCTCACCTC ATTCTTTTGG CAGCACCTCT GGAGACTAGT
  GCTGGGCAGG CAATGGAGTG TGTTCAAATT CCACATAAAC CCTTATGCAT GCCTTTGGGG
  TAAACCCCCT CCCCCCTGAG CTAGAGTCAT TATGCCCAGT CTCTTGAGTG TTACAAGTCT
  Y
  GAGGAAGGAG GGACTGCCCT GATGGAAGGA TCCAGACAGC TCGGTGGAAA CCTAGGAATT
  GGGATTGACC ATGGGGAATG GCTGGGGTTT TGCTGGGCTT CCTGATGGCA GCCCACTTGT
  GCCTCTTGAT GTCAGGAAAG CGAGCTGCTA CGGTTGAAGG CCTTTGTTCT CTTTGGGAAG
  CTTACAAAAG TGGTTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss144898702	ENSMUSSNP5514332	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48080626					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88185296 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	1305 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1536 bp upstream
Tssr7959	transcription start site region 7959	1558 bp upstream
Tssr7960	transcription start site region 7960	1573 bp upstream
Tssr7961	transcription start site region 7961	1620 bp upstream
Tssr7962	transcription start site region 7962	1774 bp upstream
Tssr7963	transcription start site region 7963	1802 bp upstream
Tssr7964	transcription start site region 7964	1817 bp upstream
Tssr7965	transcription start site region 7965	1853 bp upstream