rs48080897 SNP Detail

Summary

• ID
  rs48080897
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144554735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCATTCT AAGATTTGTC GGTAGCCCGG GTGCTACAAG
  AAGAGCACAT CATTGTTCTA TCTCTCATAT TTAATCCTTC AGCATAGTTG GATAAAATTG
  A
  CAACTATTAT GGTGTGACTG TGACATGATT TCTGTCCCTG GATGGTAGTA CCACCAAAGC
  CACGTGAACT CCTGTGTGTT GGCTGAAAGG AATCCCGTG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147805075	ENSMUSSNP5010436	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48080897					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144554735 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr374001	regulatory region 374001	1936 bp upstream
Tssr20549	transcription start site region 20549	1968 bp upstream
Tssr26613	transcription start site region 26613	1743 bp downstream