rs48082114 SNP Detail

Summary

• ID
  rs48082114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAACCTA CAGAAACAAG
  ATTACTCTTC TGTCAGCTCC AGCTCCAAGG ATTTAGAGCC ATGATGAACA GATAGCCAAT
  AGTGCCCATG GCCCTTAGAC TAGGGCCATT TTCCTCATGG GGTGGATTCA GACATGACAG
  GTAAGGAGGG GGATAGCAGA TGTAACTCTT CAACCCGGTA GAAAAGAACC AAGGCTGCAA
  R
  CATGACATAC AGCAATACTT CTGGAGCCGC AGCGCCTGAG AAACTCTTAT AAACTGTCTT
  GGAGAACTGG TTTATGCTTT GAAGACAATT CAAGTAGCCC TCTGGATAGT TAACTTTCTC
  GGGAGTGGAT ATTTTTTCTT GTTGAAACCA AAGACTCCCA TTATTACCTG CACATTTGGT
  CTGTTTCTTT TAGTTGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146251721	ENSMUSSNP625527	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48082114					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	650 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	977 bp upstream
Rr100958	regulatory region 100958	18 bp proximal
Tssr37060	transcription start site region 37060	991 bp upstream
Tssr37061	transcription start site region 37061	1003 bp upstream
Tssr37062	transcription start site region 37062	1036 bp upstream
Tssr41531	transcription start site region 41531	888 bp downstream
Tssr41532	transcription start site region 41532	994 bp downstream
Tssr41533	transcription start site region 41533	1080 bp downstream
Tssr41534	transcription start site region 41534	1198 bp downstream