rs48083747 SNP Detail

Summary

• ID
  rs48083747
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAACAAA CAAATAAATA
  AATAAAATCT AGCAAAATGA CTTTCATGAG ACGAGTTGTC CTCTCTCCTG CCATTTATTT
  TCCATTTCCT ATGAATCTCC ACACGGATAT ATCTCCAGCT TTAACAAAAG AGAGCCGAGC
  TCCATGGTCC GTGCCTGGAG TCCCAGCACG GTTAGACTGA GCCAAGAGCA TCCTTGCACA
  S
  AGGGACTAGG GGACAAGCTG GTTACCATGA GAAGACACAA ATGGTCCTGC AACCCAGATG
  GACAAATCCT CAGAAATATC ACTAATTATT GATGCTCTTG GGTCCCAAAT TTGATCATCT
  GTAGATCTTA TTGATTTTTA CAGTTCAATC ATATCTGCAT TTTCTCTATT CTTCTCATTC
  ACACCACCAT CATGGCTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61079238	NES16586928	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	G	G	G	G		G	G	G		G
ss135865131	ENSMUSSNP4848284	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320954699	CHEV_3_127203110	CHEVERUD	SCREENING_POP	f	SNP											G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48083747					SNP	C	C	G	C	G	C	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079238	NES16586928	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293841 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	842 bp upstream
Cpgi13791	CpG island 13791	783 bp distal
Rr584800	regulatory region 584800	701 bp distal
Tssr35576	transcription start site region 35576	1154 bp upstream
Tssr35577	transcription start site region 35577	1121 bp upstream
Tssr35578	transcription start site region 35578	1099 bp upstream
Tssr35579	transcription start site region 35579	1055 bp upstream