rs48084373 SNP Detail

Summary

• ID
  rs48084373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90916298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA GATTCTGGCT TTCTTCCTTC
  R
  TAATTTTATA AAGTGTTGCC ACTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147290144	ENSMUSSNP2681850	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323387251	CHEV_10_90543181	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48084373					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90916298 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	1747 bp proximal
Rr436975	regulatory region 436975	651 bp distal
Rr436976	regulatory region 436976	1299 bp proximal
Rr436977	regulatory region 436977	1983 bp proximal
Tssr95222	transcription start site region 95222	1655 bp upstream