rs48085148 SNP Detail

Summary

• ID
  rs48085148
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29965147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCCCTCA TGATGGGATT
  GAGGACATGT GCCATCGATC CTGGCTCTTT TTTTCCTGTT TGAGATGACC AAAAGAGAGC
  TCTGAATCAG ATTATTGGTT TAGCTTCTGG GAGTAGCAGT AGTACTTCCT GTTGAGTGAG
  GGTTTTTTTG TGAGGTGGGG GTGGGAGACA GGCTCACTCA AGAGGTCCAT CTGGCCGGGC
  R
  TGGTGGTGCA CACCTTTAAT CCCAGCAGAG GCAGGCGGAT TTCTGAGTTC AAGGCCAGCC
  TGGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTACACA GAGAAACCCT GTCTTGGAAA
  AAAAAAAAAA AAAAGAGGTC CATCTGATAA AGTTGGACAG TGGTGGTGGC GCCCATCTTT
  AATCTTGGGA GGCAGAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146398031	ENSMUSSNP4458623	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48085148					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29965147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11424	CpG island 11424	1994 bp proximal
Rr554206	regulatory region 554206	109 bp distal
Rr554207	regulatory region 554207	1183 bp proximal