rs48085564 SNP Detail

Summary

• ID
  rs48085564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35958078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCAGTTC TGAGATCACA
  GAAGAAAGGC CCTCTGCAGC CACCCTGCTT CCCAGCCGCC CTCCAGCTCT GCCCAGCAGA
  GGGTGCTGGG ACGCAGAGAA AGAGTGGGAT GGCCAGACAG GACCGAACAC AAGAACTAAC
  CTCGCCCACC CTTGTGAGGC AGCTGTTAAT CACCCCCTTT AAGGCTGAAG ACATTCCAGA
  K
  CACATTCATC TCCACGTGTC CCACCCTCTG TGACATTGGT GACTGTCCTG TCCTCTCTTG
  TCCCAAGTGC TATAAACAAT AAAGTAACCT TACCTGGGTT TCTAGACAAG ACAGTTTTTT
  AAACTTGACT ATTCTACAAA CTGATGATGA TAGTGTGTGA GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61762173	NES17696574	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48085564					SNP	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61762173	NES17696574	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35958078 () rs orientation: forward

Symbol	Name	Function Class
Cdyl	chromodomain protein, Y chromosome-like	within coordinates
Gm48708	predicted gene, 48708	within coordinates
Rr477255	regulatory region 477255	1751 bp distal
Rr477257	regulatory region 477257	1495 bp distal
Rr477258	regulatory region 477258	359 bp distal
Rr477259	regulatory region 477259	32 bp distal
Rr477260	regulatory region 477260	210 bp distal
Rr477261	regulatory region 477261	111 bp distal