rs48085699 SNP Detail

Summary

• ID
  rs48085699
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69872963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTCCTCCA AAAAGGCTCT GGAATTCTCT AGCTTGTGTG
  TATGGGCTTA TTATTAAGAC CCTGGGACAG AAAACGATGC TTTTCCAATA GGCATCTTTA
  S
  TTGTCAGATG CACATTAAAG TTGGGTGTCT CATTAGACAA GCTGGCTGTT AGCTGGAGAG
  CTTGCATCTG AAGGTGGGCA TGTTTCTCCA GGCGACTCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss132363617	ENSMUSSNP242367	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C		C
ss323732459	CHEV_11_69795639	CHEVERUD	SCREENING_POP	f	SNP				G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48085699					SNP	G	G	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69872963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	450 bp distal
Ctdnep1	CTD nuclear envelope phosphatase 1	within coordinates
Elp5	elongator acetyltransferase complex subunit 5	611 bp upstream
Gm56228	predicted gene, 56228	1323 bp downstream
Rr402684	regulatory region 402684	1320 bp downstream
Rr450182	regulatory region 450182	1844 bp distal
Rr450183	regulatory region 450183	971 bp distal
Rr450184	regulatory region 450184	395 bp distal
Rr450185	regulatory region 450185	795 bp proximal
Tssr102587	transcription start site region 102587	1375 bp downstream
Tssr102588	transcription start site region 102588	1358 bp downstream
Tssr102589	transcription start site region 102589	1309 bp downstream
Tssr102590	transcription start site region 102590	1296 bp downstream
Tssr102591	transcription start site region 102591	1051 bp downstream
Tssr102592	transcription start site region 102592	923 bp downstream
Tssr102593	transcription start site region 102593	877 bp downstream
Tssr102594	transcription start site region 102594	768 bp downstream
Tssr102595	transcription start site region 102595	747 bp downstream
Tssr102596	transcription start site region 102596	666 bp downstream
Tssr102597	transcription start site region 102597	657 bp downstream
Tssr102598	transcription start site region 102598	635 bp downstream
Tssr102599	transcription start site region 102599	604 bp downstream
Tssr108900	transcription start site region 108900	1908 bp upstream
Tssr108901	transcription start site region 108901	1866 bp upstream
Tssr108902	transcription start site region 108902	1847 bp upstream
Tssr108903	transcription start site region 108903	1562 bp upstream
Tssr108904	transcription start site region 108904	897 bp upstream
Tssr108905	transcription start site region 108905	873 bp upstream
Tssr108906	transcription start site region 108906	844 bp upstream
Tssr108907	transcription start site region 108907	493 bp downstream