rs48086118 SNP Detail

Summary

• ID
  rs48086118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136096502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATG ACCTTCTTGG AGTAGATATG
  Y
  CATTTATGTG TGGGCTTTAT AAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133829288	ENSMUSSNP935580	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321993347	CHEV_6_136069522	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48086118					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136096502 () rs orientation: forward

Symbol	Name	Function Class
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr2039	transcription start site region 2039	783 bp upstream