rs48086515 SNP Detail

Summary

• ID
  rs48086515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13131964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTTGCT GCTCCTGCAA
  AGGACCTAAG TTCAGATCCC AGCACTGACA TCAGACAGTT TACAACCAAC TATAACTCCA
  GAGTGTTGGG CTCAGACACC TTCAGTAGTC CTTGGGTACC CACAGAACAT ACCCAGACAC
  AGATATATAC ATAATTAAAA GTAAAATAAA TTTTATTTTA TTTTCAAAAA AAGAACAAAT
  R
  GAGGACCAAA AGAAGAAGGA AGAGGATAGG AGCAATGACT GGGTGTGGTG GTGCATGCGC
  ACAACCAGGT GACAATTGAC AAGGTGGAGC CGGAAGACAC CTGTGTGTTG GAGGCCGCCC
  TGGGTTATAT AGTGAGACCC TTTTTAAAAA CAGAAAACAG AGAGACAGAG AGACAGAGAC
  AGAGAAGTGG GCTTAATATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60328610	NES15831473	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48086515					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60328610	NES15831473	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13131964 () rs orientation: forward

Symbol	Name	Function Class
Gm5250	predicted gene 5250	285 bp upstream
Gm37162	predicted gene, 37162	1789 bp upstream
Rr370874	regulatory region 370874	1145 bp downstream
Tssr12	transcription start site region 12	1325 bp upstream