rs48087060 SNP Detail

Summary

• ID
  rs48087060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATCCCAT ACTGCACCAG
  GCGCTGTGCT TGCAAGGCTC CCAGCGTCAG GGGGAAGGAA GCACAGTGAC TTCCATTTTG
  ATCCTGCTGT GGGAAACTGG GGTGGGGGCA TCTTTTCACT TCCCGCTTCG AGCCTGGGAT
  GACTGGAACA TTGAATTCTG AAGGTTGAGG GCCAGGAGAT GCTGGGTTTC CATCCCTGCC
  K
  GACTAAAGTT AGCCTTTTGG CTTCCTGTTT CCTCTCTGAA AACTTAACCT CTGCCCCATG
  CGATGGACAA CGATCTCTTG CCAATACTTT GAGAAGACTC AGATCTTTCA TCTGCAGCCC
  ATCGTCAGAA CTCAATCCTT CCAATTGCCC AGGGCCACAC GTAGTCCGTG TGGATTTGTG
  TTCTCTCAAA CTGTGCCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63681304	NES17064337	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48087060					SNP	G	G	G	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681304	NES17064337	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714850 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1714 bp upstream
Rr513336	regulatory region 513336	1770 bp distal
Rr513337	regulatory region 513337	1304 bp distal
Tssr4819	transcription start site region 4819	759 bp downstream
Tssr4820	transcription start site region 4820	143 bp downstream
Tssr137563	transcription start site region 137563	1859 bp downstream
Tssr137564	transcription start site region 137564	1829 bp downstream
Tssr137565	transcription start site region 137565	1692 bp downstream
Tssr137566	transcription start site region 137566	1683 bp downstream
Tssr137567	transcription start site region 137567	1315 bp downstream
Tssr137568	transcription start site region 137568	1284 bp downstream
Tssr137569	transcription start site region 137569	1263 bp downstream
Tssr137570	transcription start site region 137570	1246 bp downstream
Tssr137571	transcription start site region 137571	908 bp downstream
Tssr137572	transcription start site region 137572	809 bp downstream
Tssr137573	transcription start site region 137573	799 bp downstream
Tssr137574	transcription start site region 137574	780 bp downstream
Tssr137575	transcription start site region 137575	770 bp downstream
Tssr137576	transcription start site region 137576	85 bp downstream
Tssr137577	transcription start site region 137577	322 bp upstream
Tssr137578	transcription start site region 137578	393 bp upstream
Tssr140504	transcription start site region 140504	1708 bp upstream
Tssr140505	transcription start site region 140505	1659 bp upstream
Tssr140506	transcription start site region 140506	1239 bp upstream
Tssr140507	transcription start site region 140507	876 bp upstream
Tssr140508	transcription start site region 140508	834 bp upstream
Tssr140509	transcription start site region 140509	816 bp upstream
Tssr140510	transcription start site region 140510	768 bp upstream
Tssr140511	transcription start site region 140511	754 bp upstream
Tssr140512	transcription start site region 140512	457 bp downstream
Tssr140513	transcription start site region 140513	468 bp downstream
Tssr140514	transcription start site region 140514	501 bp downstream