rs48087109 SNP Detail

Summary

• ID
  rs48087109
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26757434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGTCATC CTCTCTGCTG
  ACGTCACCAC TTGCCCCACC CTGCCCCTCC CATCCACATC ACTGACTCCT AATCCAAGTT
  CAGCTTTAGG TGAGAAGAGC CAGGGAGCCA CACTTTCTCT CCCCCAGGCT GCTTCTTTGG
  CTTTTGGCCT TTTCCTGTCC TATTTCAGAC CCTCTGGCTC ACTCCCACAG AAGCTAAGCA
  G
  ACGAACTGGA ATCAGTGGGT CTGCGTCCCC CACCCCCGGG GGGGGGGCAT TTGAATGTTA
  AGTTAAACCA GGTTTTATAC TTTGGTGAAA GGAGCAAGGT GGTGAGATTA TCCAGTGATC
  CCTGGAGCAT TCTTTCCTGT GTGTAGTAGG AACTCTTAAT AAACAGTGTC CTGTTAGAAG
  CAAACATGTT AGACACAGTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145405446	ENSMUSSNP7209136	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48087109					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26757434 () rs orientation: forward

Symbol	Name	Function Class
Gm50275	predicted gene, 50275	220 bp upstream
Rr405114	regulatory region 405114	110 bp downstream
Tssr143246	transcription start site region 143246	108 bp downstream