rs48087281 SNP Detail

Summary

• ID
  rs48087281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:12423100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG TGATACCTGT AACAATCAGA
  R
  ATTCTTAATC GCTTGTGGTA TGGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61349670	NES16962061	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	G		A	A	A	A		A
ss323899002	CHEV_12_12379905	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48087281					SNP	A	A	G	A	G	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61349670	NES16962061	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:12423100 () rs orientation: forward

Symbol	Name	Function Class
4921511I17Rik	RIKEN cDNA 4921511I17 gene	within coordinates
Cyria	CYFIP related Rac1 interactor A	within coordinates
Rr259609	regulatory region 259609	1900 bp distal
Rr259610	regulatory region 259610	1300 bp distal
Rr386868	regulatory region 386868	within coordinates