rs48087702 SNP Detail

Summary

• ID
  rs48087702
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:35946099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGGGTG AGGTTCTGTG
  GGACTCATGG TTTTGGTATC TTAACAGAGA GACATGGCTG CTTATAAATA TTGATTTCAT
  TATCCAGGTT ATTTACTCTG CACAGCACTT CCTGTGATGA CTCTTGTGGA AGTCTTCTAG
  CGTTCCTGCA TTTGTGTCCC AGGCGAGAAC ATTGCCCTAT GTGTGTGTGT GTGTGTGTGT
  T
  TTTTTTTTTT CTGTGTGTAT GTCAACACAC TATATATAAT GGATGTTTAA TAATGCGGTG
  TATGGGGCTG GAGAGATGGC CCAACAGTTA ATAGCATGCA CTGCTCTTCA GAGACCTAAG
  TTTGGGTTCC AACACTGGGT AGCTCAGGAC CAATTGTAAC TCTGGCATCA GAAGAATCTG
  TCACCCTCTA CTGGCCTCTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145540448	ENSMUSSNP4461271	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48087702					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:35946099 () rs orientation: forward

Symbol	Name	Function Class
Mucl3	mucin like 3	548 bp downstream
Rr331096	regulatory region 331096	699 bp distal
Rr331097	regulatory region 331097	within coordinates