rs48088355 SNP Detail

Summary

• ID
  rs48088355
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112639976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC CCCCGGCACC TCCAGAAACC
  T
  CCTAGTCCAG GAAGCAGCTT CCGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss138725600	ENSMUSSNP5235405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48088355					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112639976 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	within coordinates
Gm30150	predicted gene, 30150	946 bp upstream
Rr369631	regulatory region 369631	1888 bp upstream
Rr473550	regulatory region 473550	1989 bp distal
Rr473551	regulatory region 473551	1488 bp distal
Rr473552	regulatory region 473552	613 bp distal
Rr473553	regulatory region 473553	within coordinates
Rr473554	regulatory region 473554	724 bp proximal
Rr473555	regulatory region 473555	837 bp proximal
Rr473556	regulatory region 473556	880 bp proximal
Rr473557	regulatory region 473557	1440 bp proximal
Rr473558	regulatory region 473558	1905 bp proximal
Tssr115391	transcription start site region 115391	870 bp upstream
Tssr117875	transcription start site region 117875	1965 bp upstream
Tssr117876	transcription start site region 117876	1498 bp upstream
Tssr117877	transcription start site region 117877	474 bp downstream
Tssr117878	transcription start site region 117878	533 bp downstream
Tssr117879	transcription start site region 117879	651 bp downstream
Tssr117880	transcription start site region 117880	801 bp downstream
Tssr117881	transcription start site region 117881	832 bp downstream
Tssr117882	transcription start site region 117882	1211 bp downstream
Tssr117883	transcription start site region 117883	1232 bp downstream
Tssr117884	transcription start site region 117884	1284 bp downstream