rs48088355 SNP Detail

Summary

• ID
  rs48088355
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112639976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC CCCCGGCACC TCCAGAAACC
  T
  CCTAGTCCAG GAAGCAGCTT CCGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss138725600	ENSMUSSNP5235405	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48088355					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112639976 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	thymoma viral proto-oncogene 1			Intron
				Noncoding-Transcript-Variant
Cpgi5173	CpG island 5173			within coordinates
Gm30150	predicted gene, 30150			946 bp upstream
Rr369631	regulatory region 369631			1888 bp upstream
Rr473550	regulatory region 473550			1989 bp distal
Rr473551	regulatory region 473551			1488 bp distal
Rr473552	regulatory region 473552			613 bp distal
Rr473553	regulatory region 473553			within coordinates
Rr473554	regulatory region 473554			724 bp proximal
Rr473555	regulatory region 473555			837 bp proximal
Rr473556	regulatory region 473556			880 bp proximal
Rr473557	regulatory region 473557			1440 bp proximal
Rr473558	regulatory region 473558			1905 bp proximal
Tssr115391	transcription start site region 115391			870 bp upstream
Tssr117875	transcription start site region 117875			1965 bp upstream
Tssr117876	transcription start site region 117876			1498 bp upstream
Tssr117877	transcription start site region 117877			474 bp downstream
Tssr117878	transcription start site region 117878			533 bp downstream
Tssr117879	transcription start site region 117879			651 bp downstream
Tssr117880	transcription start site region 117880			801 bp downstream
Tssr117881	transcription start site region 117881			832 bp downstream
Tssr117882	transcription start site region 117882			1211 bp downstream
Tssr117883	transcription start site region 117883			1232 bp downstream
Tssr117884	transcription start site region 117884			1284 bp downstream