rs48089242 SNP Detail

Summary

• ID
  rs48089242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATGAAGGA GGGTCCTCCT CTCTCTTCTA
  CAGCAAGAAG TGTAGCAGCC GTCTCTGCAT GGAAAGAGTG GGAGCCCAGG GAAAGCCACC
  TTCAAAAGGA GTTTGGAAAA CATTATTCTT CCTGACTGGA GTCCTGAAGG AACCTCATTA
  R
  GCCTGCTGAC CAAACGAGTA CCTCCCTGGT CAGTCGCCTG CCGCTTAAGT CATTTGCTTA
  AAACAGGAAT GTGTGGCTGA GCAGAGAGGA AAGGCACTGA GTTTGGAGGG GAATGGAGAG
  GGAGTTGGTG CAGGCAGGGC CTGAGTGGCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60803580	NES16473393	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G	A	A		G	A	A		A
ss145546390	ENSMUSSNP5436767	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss319993400	CHEV_1_137686860	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48089242					SNP	A	G	A	G	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803580	NES16473393	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718021 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1796 bp upstream
Rr419276	regulatory region 419276	1990 bp distal
Rr419278	regulatory region 419278	1133 bp distal
Rr419279	regulatory region 419279	1315 bp distal
Rr419280	regulatory region 419280	within coordinates
Rr419281	regulatory region 419281	257 bp distal
Rr419282	regulatory region 419282	1954 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron