rs48089345 SNP Detail

Summary

• ID
  rs48089345
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24007832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT CTCTTGTAGA GGGGAAAGGC
  R
  GGACTAGAGG TTTGAAAGTG GGGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325327369	CHEV_17_23925825	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48089345					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24007832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	1593 bp proximal
D930048G16Rik	RIKEN cDNA D930048G16 gene	1846 bp upstream
Gm52285	predicted gene, 52285	1344 bp downstream
Rr339283	regulatory region 339283	1831 bp distal
Rr339284	regulatory region 339284	1431 bp distal
Rr339285	regulatory region 339285	768 bp proximal
Srrm2	serine/arginine repetitive matrix 2	1674 bp upstream
Tssr142954	transcription start site region 142954	1767 bp upstream
Tssr146666	transcription start site region 146666	1022 bp downstream