rs48089975 SNP Detail

Summary

• ID
  rs48089975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:54075448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGCAGACA GAGGCAGGAA GGACCCTGTC CCAGCTCCTC
  CACTGCCCCT GTGCACTCCT GTCTGCTCCC CAAGAGTGTA ACTTCTGAGT CAGAAACTTT
  R
  GGGTCCATCA TGATACCATG TGGCCACTGG CTGTGTTTAC GGGAGGATGA AGAAAATCTC
  CCCAGCTCTC AGAAGGTCTT CTTGCTGATA CGTTCCTGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss62787617	NES17356790	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48089975					SNP	G	G	G	G	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62787617	NES17356790	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:54075448 () rs orientation: forward

Symbol	Name	Function Class
Tssr145231	transcription start site region 145231	1401 bp upstream
Tssr145232	transcription start site region 145232	1409 bp upstream
Tssr145233	transcription start site region 145233	1437 bp upstream