rs48090368 SNP Detail

Summary

• ID
  rs48090368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118686915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTGACC TTCCTCCCAG
  TCTTTTATCC TTCTTCCCAA CATCACTTGC TTTCCTGCAC TTTATGCAAT TCACAGCTAA
  CATTCTAACG ATTATCCGTC AATCACCCAC CTTCGAGACT AAAATGCAAT CCCCAGAGAC
  CCCTTTGCTG TGTGCCAGCG TGTGCCCAGG AGGCCAGATA GGAGGAAACA GTGGAGGAGA
  Y
  GGTACAGTGA AGTGAGATCT TTCTGGGGAG AGGGAAATGC CAGTGTCTGC TTCAGGGCAG
  TATCATCTTG GCCAACTTCA TGCCTTCCAG CCACACAGAG ACTGTGAAAT GCCTGGGACA
  CAGTGTAGCT GAGGAAACCC TGCCATGATG ATACACACCT TTCCAAAGAG CTATGCTTCC
  CTCCCTCACT CTGCCTAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61322066	NES16929606	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	T		C
ss323503872	CHEV_10_118288066	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48090368					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322066	NES16929606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118686915 () rs orientation: forward

Symbol	Name	Function Class
Gm40776	predicted gene, 40776	1878 bp downstream
Gm67702	predicted gene, 67702	1871 bp downstream