rs48091012 SNP Detail

Summary

• ID
  rs48091012
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:132617468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCAGCTGGAA TGATCCCACA TGGCTTTGCC CCGGAGTCTG
  ATCCCTCCCC CCACCCCATC CTTGCCTGGG TCTCTCTCAT CCCTCTTGGG GGAGCCTCTG
  A
  CCAGTGTCCT CTTCACTAAG TGCAAGAGAA GCAAACTGGA ACTACTTAGC TGTCCATCCA
  GTCCTAATCC CTCTGCGAGA GACATTACAT TAATCTAGCA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145938500	ENSMUSSNP3139639	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48091012					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132617468 () rs orientation: forward

Symbol	Name	Function Class
Ctbp2	C-terminal binding protein 2	within coordinates
Rr656751	regulatory region 656751	1 bp distal
Tssr75241	transcription start site region 75241	410 bp upstream
Tssr75242	transcription start site region 75242	257 bp upstream
Tssr75243	transcription start site region 75243	220 bp upstream