rs48093157 SNP Detail

Summary

• ID
  rs48093157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:22207598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGTTTTG ACCTGAGAGA
  GAAATATTTC CTTCATCCTT ACACCCTTAC ATTAGGGTTC TTCCCTTCTG AATTATCTGA
  TGCACAATGA GGTCTGGCTT TGGAGGAAGG CTTTCCTACA GTCGTTACCT TCATAGAGCT
  CCTCGCCTAC GCAGAGTCTG TGGTGTACGC ATGCATGACT TGTAAAGGAA GGCTTCCCTA
  Y
  ATTTCCATAT TCATTAGGTT TCTCATCTGT ATGAATCCGT TGATGTCAAG CAAAGTCAGA
  CTTTCTCAAG AAAGCTTTGC ATTCATATTG TTTATGTCCT GCATGACATT TCTGATGTAC
  AGAGCTGTGA CTTGCAAGAG AAAAGGTTCC TGCATTCTTC ATGTTATTAG GAATTCCAAG
  CTGTGTGAAT TCTCTGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss136226664	ENSMUSSNP2872386	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48093157					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22207598 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm18225	predicted gene, 18225			within coordinates
Gm48627	predicted gene, 48627			730 bp upstream
Rr675181	regulatory region 675181			613 bp distal
Zfp810	zinc finger protein 810			Intron
				Noncoding-Transcript-Variant