rs48094681 SNP Detail

Summary

• ID
  rs48094681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52203936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCCGCCC GCGCGCGCCC CCAGGGCCGG CCTAGAAAAG
  TCAAATACAA GGCTCTCTCC ACCTCAAACA GAGTGACCAC CGCCCCTGTC GCGACGCACC
  R
  TCGATGATAC AACCACCTAA AATGGGCTAC CGACCCTAGT CAGACTGGAA AGCCAGCCAG
  GCGCTTGCAC ATCGGCCAGA TCACCCTTGC TCCACAGGGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886885	NES15970101	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48094681					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886885	NES15970101	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52203936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17431	CpG island 17431	577 bp distal
Gm57855	predicted gene, 57855	within coordinates
Gm68361	predicted gene, 68361	235 bp upstream
Hoxa9	homeobox A9	767 bp upstream
Rr146300	regulatory region 146300	within coordinates
Rr146301	regulatory region 146301	1464 bp proximal
Tssr61007	transcription start site region 61007	1725 bp upstream
Tssr61008	transcription start site region 61008	1700 bp upstream
Tssr61009	transcription start site region 61009	1092 bp upstream
Tssr61010	transcription start site region 61010	1000 bp upstream
Tssr61011	transcription start site region 61011	794 bp upstream
Tssr61012	transcription start site region 61012	760 bp upstream