rs48095183 SNP Detail

Summary

• ID
  rs48095183
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:116406474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGAGAAA GTTTCTGTTT
  TCTAAATCAT GTGTCATAGG AGTCACACTG CCAGTTGTTT ACATGCAGTG ACCAAAGTTC
  TTATTTTACT GACAGAGTCA GCTGTACTGT CGCTGCTGGC TAAGAAGTTT TTGTGTGCTG
  GGTTCTAGTT TGGGTCAGTC TGATGAAATG CTTAGTGCTG ACTCAATAGT AATAGGTTCT
  K
  CTATCCTGCC ATATACATAT GTATTGAGCA ATTTCAACTA AATCATGTGC TTAGGTAATT
  AATGTTTCTT TTCTCTTTTT AGTGAAGGGT TTTTTTTATG TTTCATTACT TCTTGGCATT
  CTGAAGGAGA TAGCTGGAAA CACCATAATT CACAAAACAG ATTCAGATGA AAAAGTCACA
  GTGCTGTTTG ACTTAGTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61724805	NES17666906	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48095183					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61724805	NES17666906	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:116406474 () rs orientation: forward

Symbol	Name	Function Class
Ncapg2	non-SMC condensin II complex, subunit G2	within coordinates
Tg(Camk2a-tTA)1Mmay	transgene insertion 1, Mark Mayford	within coordinates
Tssr115524	transcription start site region 115524	95 bp upstream