rs48095645 SNP Detail

Summary

• ID
  rs48095645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79296017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAGCAAG CCATGAGGAA
  CAAGCCAGTA AGCAGCTCTC CTCTATGGCC TGTGCTTCCA TTCCTGTCTC CAGGTTCCTG
  TCCTGCCTTC CTTCTGTGAT GGACCGTGAT GTGGAACCTT GTGCTGAATG GCCCCTTCCT
  GGCAGAATTG CTTTTAGTCA TGTTGTTTTA TCATGGTAAG AGAGAGCAAA TGAATATACT
  Y
  TGTTTTTAAG GACTGTGGAA AAGAAAAGGA CACAGGCTGA CATAGGGCAA GGACCACCAA
  CTGGACCACT TGTGCTTAGT ACTTATATGT CATAAACATC AAAATGGGAT ACAGGTCAGC
  ATGTTTCATC AGAGAGGATA GAAAGATAGT AGAGTCAGAA AAGGAAGCCA GATAAAAACC
  TGCCACTGTA TAAAAGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss61652839	NES17600560	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs48095645					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61652839	NES17600560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79296017 () rs orientation: forward

Symbol	Name	Function Class
Rr387481	regulatory region 387481	within coordinates
Tssr116835	transcription start site region 116835	515 bp downstream
Zfyve26	zinc finger, FYVE domain containing 26	within coordinates