rs48096569 SNP Detail

Summary

• ID
  rs48096569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31896439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT TGAAACGCTG TGAGCTGTGT
  R
  ATGTTTGTTC TGAGTGAGGA AAACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60257453	NES15753514	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	A	G	A	G		G	G	A		A
ss145462630	ENSMUSSNP1768439	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss325359836	CHEV_17_31814410	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48096569					SNP	G	G	A	A	G	A	A	G	A	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257453	NES15753514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31896439 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	466 bp upstream
D17Rua3	DNA segment, Chr 17, Rutgers University 3	1050 bp proximal
Gm50222	predicted gene, 50222	within coordinates
Tssr143680	transcription start site region 143680	459 bp upstream
Tssr143681	transcription start site region 143681	1459 bp upstream
Tssr147305	transcription start site region 147305	644 bp downstream
Tssr147306	transcription start site region 147306	666 bp downstream
Tssr147307	transcription start site region 147307	716 bp downstream
Tssr147308	transcription start site region 147308	1033 bp downstream