rs48097686 SNP Detail

Summary

• ID
  rs48097686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGAAAGT AAAACAACGA
  ATGGTTTTGC TTTCCTTTAA TCCGTGCATT GAGGAAAAGG TTATGGTGTA GCTGGTATAT
  CAGACTGTCG ATGGAAATTA TTTCCTATTT AACAAATAGG CCCAGAGACG AGTAACTCGT
  TTGGGAAAGC CTCTTTTAAA ATGCCTTCAG GGGCTGGAGA GATGGCTCAG CGGTTAACAG
  Y
  ACTGACTGTT CTTTCAGAGA TCCTGAGTCC TATCCCCAGC AATCAGATGG TGGCTCACCA
  CCATGTGCAA TGGAATCCAA TGCCCTGTCC TGGTATGCAG GTATACATGC AATAGAGCAC
  TCAGATACAT AAAATAAATA AACCTTAAAA AAAGAAAAGA CTAGTACCCA AAATGTCTTT
  AGGCCCAGCC AAGGAATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874541	ENSMUSSNP6968622	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320958014	CHEV_3_127600744	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48097686					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1303 bp distal
Fam241a	family with sequence similarity 241, member A	1503 bp upstream
Rr398009	regulatory region 398009	1253 bp downstream
Rr584896	regulatory region 584896	1807 bp distal
Rr584897	regulatory region 584897	1012 bp distal
Tssr35608	transcription start site region 35608	1593 bp upstream
Tssr35609	transcription start site region 35609	1556 bp upstream
Tssr35610	transcription start site region 35610	1489 bp upstream