rs48098135 SNP Detail

Summary

• ID
  rs48098135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80039029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCAGAG GCTGCTAGGC
  CCATATGTGT CCAGCCCCGA GGTATCTTTG CACACTCACA CGCACTCTGT GCTCATGTGT
  GTCGTGGGAG TTGAGGTGTG CCTACAAACT CCTTGGGCAC TGCCCTCTCT CCTCTCTGAG
  CCACTCTACC AACATTGGAC TGTCACGGCA GCTTCTTTAA CAGAAGCAGT TCGGTGTGGT
  Y
  AGGACAGGTC ACGTGCTCGT CACGAGTGGA GTCTGTCCCT CCACCCTTGC ACACCTGCCC
  TGAGCTGCTG TCCTGCCTTG TAACAAAGGC TAGGAATCCA GCAGATGCCT GTGTCAGCAT
  CTGCCTGAGC TGCCCCAAGA GAATAGCTTA GCATGTTCCC AGACGTCCCT CCTCAGTCTC
  ATGTCAAGAG TGTCCTCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569753	NES17023036	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	C		T	T	C	T
ss148214233	ENSMUSSNP3220177	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48098135					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569753	NES17023036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80039029 () rs orientation: forward

Symbol	Name	Function Class
Rr308002	regulatory region 308002	1429 bp distal
Rr308003	regulatory region 308003	1772 bp proximal
Rr310675	regulatory region 310675	1389 bp proximal
Rr314587	regulatory region 314587	629 bp distal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates