rs48098460 SNP Detail

Summary

• ID
  rs48098460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12274791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCACACC CACAGTGACA
  CACCCATTCC AAGCAGGTCA CACCTATTCC AAGAAGGCCA CACCTTCAGA TGGTGCCACT
  CCCTGGTCCA AGTTATACAA ACCATCACAC CACCCATGAA GAAGTTTCCC TTGAGCTGAG
  TTACAGGGAC ATTTGCTCCC TGCATGACTG CGAGCTGAGC AGTGTTGGGA GGGCATCCAG
  R
  AGGTGGAGGA GGAATGTTGC CAGCGGTGGC ACCAGCTCCA AATCTGGCAC CTGCATCATG
  CCCTCCTTCC ACCAACACTG CTGAGCCAGG TGAATAGTTG GGACCAACTG CATAATAAGC
  CATGGGTATT GTGGAACCTA GAGGCCCAAC AGCCACAGAC TGGGCCATAG GCAGATACAA
  TGAGGCGCCA GGAAATGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61743558	NES17669071	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48098460					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61743558	NES17669071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12274791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5274	CpG island 5274	1567 bp distal
Gm47021	predicted gene, 47021	within coordinates
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	1792 bp upstream
Rr270765	regulatory region 270765	1610 bp proximal
Rr281008	regulatory region 281008	1390 bp distal
Rr387989	regulatory region 387989	within coordinates
Rr403567	regulatory region 403567	1574 bp downstream
Tssr121431	transcription start site region 121431	1843 bp upstream
Tssr121432	transcription start site region 121432	1771 bp upstream
Tssr121433	transcription start site region 121433	1720 bp upstream
Tssr121434	transcription start site region 121434	258 bp downstream