rs48098781 SNP Detail

Summary

• ID
  rs48098781
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3076052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCACAGGA GCACACTCTC GTGGAGGCCC ACACCCTCCC
  TGTGCCTACC CAAGATGTGT CAGTCAGAGA AGCATCCAGG ACCGGAGCTC CAAGCAGCAG
  A
  AAAATGGTGA GATGCTGCCC ATGAGACCTA ACCCTCAATG TACCCCGGCA TAGTTTCAGG
  AGGGTCAGAC ACCAAGTCCA GTGGCCTCAG GGGCAGGGG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss131630092	ENSMUSSNP3528124	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs48098781					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3076052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1916 bp distal
Cpgi2432	CpG island 2432	1087 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Pisd-ps1	phosphatidylserine decarboxylase, pseudogene 1	within coordinates
Rr441453	regulatory region 441453	1590 bp distal
Rr441454	regulatory region 441454	1607 bp distal
Rr441455	regulatory region 441455	1382 bp distal
Rr441456	regulatory region 441456	89 bp distal
Rr441457	regulatory region 441457	1830 bp proximal
Tssr100005	transcription start site region 100005	1998 bp downstream