rs48098846 SNP Detail

Summary

• ID
  rs48098846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74695206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGCATG TTCCTAATCT
  CCTTGTCAAG TAGCCCCCAT GCAGAAACCC ACAGAGCTTA CAGCCCTTCT CCATTAAGGG
  ATCTACTTAT TTTAATTAAT TAATTAATTA CCACGTGATA TTAGATTATA CCTCCCTTTT
  AATCACTTGG CCGTGGGTCT TTTTACAGCT ACTATTATTT TTAAATCCTT ATCAACATGA
  Y
  GTGTCTATCA TCTTCCATTA GAATAAAGGC TTCATGAAAG AAAGGATTTT TTTTTTAACC
  GCCAATCTAT ATAGTCTTGA AGAGTTCCTA GTACTTGGGT AGACTTTCAT ACATATTTGT
  TGAATTCAGG GAAGATTTTT ACGAGGAAAT TGTACACAGA AGTTGAAACA ATTTAAGAAT
  TTCCTACAGG GGAACAGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148671540	ENSMUSSNP5076812	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48098846					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74695206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	764 bp proximal
Fip1l1	factor interacting with PAPOLA and CPSF1	904 bp upstream
Rr399136	regulatory region 399136	655 bp upstream
Rr613306	regulatory region 613306	414 bp proximal
Rr613307	regulatory region 613307	947 bp proximal
Tssr46674	transcription start site region 46674	921 bp upstream
Tssr46675	transcription start site region 46675	990 bp upstream
Tssr46676	transcription start site region 46676	1096 bp upstream