rs48099043 SNP Detail

Summary

• ID
  rs48099043
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60031324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACGGCA AGAGAAAAGG
  GAGACTGAGA GTCGCGCCAC GCCGGCGCCC CAAGACCCAG GAGGAGCCCG CAGGTATTGT
  TGGCGGCGAA GCTTTGTGTC TTCGGCGGGC TGCTCCGGGC AAGAGGGCTC CCTGAATCCC
  GGCCTGCCAC CGCGCTCTGA CCTGCCGCGA AGCAGGGCTG CTGACGGGGG TCGCCGGGGG
  S
  CCCCCCCTCC CATCGCACCG CGATCCTTGT TGGAGTTGCG GGTTTGCGTG TTTGGAGGTT
  TTCCATGTGG GTGGAGGGGA TCAGTCTCAG GAGAAGGAAT TTCTTTTCTT TTTTCTTTTC
  TTTTCTTTCT TTCTTTTTTT TTAATGGCCG CAGCAGTTAG GTTGTGCTGG GAATTCTCCC
  CTCCCTTTTG CTCCACAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132248283	ENSMUSSNP1979191	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48099043					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60031324 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2977	CpG island 2977	within coordinates
Gm53710	predicted gene, 53710	128 bp upstream
Gm72548	predicted gene, 72548	within coordinates
Rai1	retinoic acid induced 1	within coordinates
Rr448331	regulatory region 448331	404 bp distal
Rr448332	regulatory region 448332	within coordinates
Rr448333	regulatory region 448333	443 bp proximal
Rr448334	regulatory region 448334	782 bp proximal
Tssr101878	transcription start site region 101878	473 bp downstream
Tssr101879	transcription start site region 101879	418 bp downstream