rs48099102 SNP Detail

Summary

• ID
  rs48099102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGATAATT GTTCCTCAAT CTAGCTCCTG TGTGTTTGTG
  TGTGTGTGCA CATACAAGAT GCACCAGAGG TCAATTGAGT GTCTTCTGCC TCTCACAGTG
  Y
  TGGGGTTACA AGCCTGTGTC CAGCAATGCT TTTTTTTTTT TTAAATTGTT GTGGTTGTGT
  TATTTTGTTT ACTTGAGACA GGTTCCCCCT ATGAAGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148092236	ENSMUSSNP7069036	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320584258	CHEV_2_156941577	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48099102					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957761 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	881 bp distal
Rr568436	regulatory region 568436	1113 bp proximal
Rr568437	regulatory region 568437	1286 bp proximal
Rr568438	regulatory region 568438	1687 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27143	transcription start site region 27143	1515 bp upstream