rs48099989 SNP Detail

Summary

• ID
  rs48099989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59954814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCACCTC GGGTCCGGCC
  CACTCCACTG TTTTAGCAGG TGGCTGTTGA GGACACAGAT CTTGATGGTC AAAGACGGCT
  GCTCCCCAAA CACCAGACAA TCACAAGATC CTCTGTCCTT GAAATGGGGT CAATATGGAG
  CCTGGAATTG GATAGCCTCC TGCCTCAGTT CCTTACTGCT GGAATTGTAG GCGTGCAACC
  Y
  CATGCTTTTT CTCTTCCACT TTACAACCAT ACCACCCCCT CTTCCCAAGG GGAAAAAAAT
  AGGAGCAGCA GGAGACAGTC CCTGAAAAAG GCTGGTACCT ACTTCCACAC CAGTCTGGTC
  ATCTTGGCTG GCCTCAGCTA TTTGGCCATT CTCAGCTTAT TTCCCATCTT CGGGAAAGGA
  GGCTCTGGGC GGACAAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323906	CHEV_10_59581740	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48099989					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59954814 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Rr219869	regulatory region 219869	414 bp distal
Rr219870	regulatory region 219870	187 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates