rs48100029 SNP Detail

Summary

• ID
  rs48100029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59954650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCATCAC TTGAGTTCCT
  AATCAGACAT TCTCGGCCTT AAGCTTTAAG GAGCCACTTT GTACTGAGTT CCAAGGACTC
  TACAGTGGGT TGTGACTGAA GTCTGTGAGT GGACTCCAAA GCCCTCAGCA GGTGCTTCCG
  AGTGGCAGGA TCATAGAGGA TTCTAGATCA CCTCGGGTCC GGCCCACTCC ACTGTTTTAG
  Y
  AGGTGGCTGT TGAGGACACA GATCTTGATG GTCAAAGACG GCTGCTCCCC AAACACCAGA
  CAATCACAAG ATCCTCTGTC CTTGAAATGG GGTCAATATG GAGCCTGGAA TTGGATAGCC
  TCCTGCCTCA GTTCCTTACT GCTGGAATTG TAGGCGTGCA ACCCCATGCT TTTTCTCTTC
  CACTTTACAA CCATACCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323903	CHEV_10_59581576	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48100029					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59954650 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Rr219869	regulatory region 219869	250 bp distal
Rr219870	regulatory region 219870	351 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates