rs48100498 SNP Detail

Summary

• ID
  rs48100498
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130089797 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G GCATCAAGCC TTCACAGGAC CAAGAGCTTG GGGATCCATC
  CAATATGCAG TCACCAAACA CAGACACTAT TGTGGATGCC AAGCAGTGCA TGCTGACAGG
  G
  ACATGATATG GCTGTCTCCT GAGAGGCTCT GCCAGAGCCT GACAAATACA GAGGTGGATG
  TTCGCAGGCA ACCACTGGAC TGAGCACTGG GTCCCCAATG G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144503973	ENSMUSSNP916815	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48100498					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130089797 () rs orientation: reverse

Symbol	Name	Function Class
Thsd7b	thrombospondin, type I, domain containing 7B	within coordinates
Tssr8552	transcription start site region 8552	1767 bp upstream
Tssr8553	transcription start site region 8553	1796 bp upstream