rs48101087 SNP Detail

Summary

• ID
  rs48101087
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118264968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTT GGGGCAAATA CTGGCTCTGC
  G
  TGTTTCTCCA TTCCTGAACA GGGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147307453	ENSMUSSNP5134736	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321283060	CHEV_4_118080376	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48101087					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118264968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	1109 bp proximal
Med8	mediator complex subunit 8	1566 bp upstream
Rr398422	regulatory region 398422	1389 bp upstream
Rr598388	regulatory region 598388	1029 bp proximal
Rr598389	regulatory region 598389	1492 bp proximal
Rr598390	regulatory region 598390	1606 bp proximal
Szt2	SZT2 subunit of KICSTOR complex	within coordinates
Tssr1279	transcription start site region 1279	1614 bp upstream
Tssr38654	transcription start site region 38654	1560 bp upstream
Tssr43049	transcription start site region 43049	1448 bp downstream