rs48101274 SNP Detail

Summary

• ID
  rs48101274
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63329747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTA GCACAGCATT GGCTAGTCTC
  R
  GTCACCAAAG GACTACTTGG TGTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146443796	ENSMUSSNP607210	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48101274					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63329747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	634 bp distal
Gm57078	predicted gene, 57078	727 bp upstream
Rr398307	regulatory region 398307	1093 bp downstream
Rr398308	regulatory region 398308	572 bp downstream
Rr593545	regulatory region 593545	306 bp distal
Tssr37559	transcription start site region 37559	1883 bp downstream
Tssr42046	transcription start site region 42046	1506 bp upstream
Tssr42047	transcription start site region 42047	1486 bp upstream
Tssr42048	transcription start site region 42048	1298 bp upstream
Tssr42049	transcription start site region 42049	1279 bp upstream
Tssr42050	transcription start site region 42050	808 bp upstream
Tssr42051	transcription start site region 42051	784 bp upstream
Tssr42052	transcription start site region 42052	753 bp upstream