rs48101346 SNP Detail

Summary

• ID
  rs48101346
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141155764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATTGCT ATTTTGAGGA
  CTCATATAGG TCACACAATA TCAGTAAATT TAAGTTGGTT CTGGGAGATT TTGACTACAC
  TGAACCTTTG TAGAATTAAG TAAGAACGCC CGTTCTAATC AGTGGTAGCT ACAGGAAAGT
  TGTGCTGGGT TGCATCACCT CCATTATACA TTCCTGTAAT ATACGCATCC CCATCCCTTG
  M
  ATTCCTGGGA ACTTATGCCA TGTTCCCTTG GCTGGCTCTC CCTTTAAAAG TTGAAGATTT
  AGAGATATTT TTCTGTTTGC TGCAAACCCA ACCTTCTAGG TTTCCTATGC TGAAAGTGTT
  ATTCTGAAGT TATGAACATA AGGTACAAAC ATAAGTACAC ACACTGCTCA CATCATATGT
  TATCATCATG TAATTGAGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss61092827	NES16592631	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C		A	A
ss320992244	CHEV_3_141112967	CHEVERUD	SCREENING_POP	f	SNP					A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs48101346					SNP	C	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61092827	NES16592631	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141155764 () rs orientation: forward

Symbol	Name	Function Class
Gm66152	predicted gene, 66152	within coordinates
Tssr32030	transcription start site region 32030	805 bp downstream