rs48103224 SNP Detail

Summary

• ID
  rs48103224
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117640550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGACAA AAGACTGGCC
  AGACAAGGAA ATCAATCGCA GCGACTCCTC TCTACAGGCG CTGCAGGCCT CATCAATAGT
  GGAAATGATC TTAGGAGCAA CTGAAAAACT AAAATCGTTA TCACAGGACA TTCTCTAGCT
  AAACCACAAA ACCATTACTG CACACCCAGC ACCCGAGTTC CCGTCTTCAC ATCTCTGCAG
  W
  CGCAGACGTC CTGTAAGCCC TGCGCACATC CACATTCGTT GGAGGACTTA TCAGAAAACA
  GTTTGGCTGT TTAATTGGGA CAGCTTTTAT TCTGTCTGGG TGGTATTCTG CGAATGCGGC
  TGGCATGGTC TTTACTCATT GGGAAATGAA AGTCACACTC AGGTTTTTCT CTTCTCTGGT
  CTTCAGTGTT ACCACGCCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52226350	NES15327812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		A	T	T	A		T
ss323499611	CHEV_10_117241701	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48103224					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226350	NES15327812	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117640550 () rs orientation: forward

Symbol	Name	Function Class
Gm67590	predicted gene, 67590	within coordinates
Rr218193	regulatory region 218193	651 bp proximal
Rr221673	regulatory region 221673	1666 bp proximal
Rr225990	regulatory region 225990	within coordinates
Rr385360	regulatory region 385360	621 bp upstream