rs48103446 SNP Detail

Summary

• ID
  rs48103446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70213313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGCACCAG GTTGGCGGAG CCCGCAAAAA CCGAGTCTCC
  AGTGGCTACG AGGATCTTGT ACTTGACCAT CTCGGCTGAT CCTCTAGAGG GACCTGGGGG
  R
  AAACTGCTCT TAAGAGGATC TGAGAGGCTG CCTCCAGAGA GTCACACCTA GACCAGAGTT
  TGGTGTATTT GAATTGCCCC CGCCCACTCA GGTCCCTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132369472	ENSMUSSNP6058920	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323735026	CHEV_11_70135989	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48103446					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70213313 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	within coordinates
Cpgi3180	CpG island 3180	64 bp distal
Rr450275	regulatory region 450275	635 bp distal
Tssr108941	transcription start site region 108941	11 bp upstream
Tssr108942	transcription start site region 108942	15 bp downstream
Tssr108943	transcription start site region 108943	33 bp downstream