rs48103468 SNP Detail

Summary

• ID
  rs48103468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98938978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAAACGA CCTGGTGGAG CCTGAAACCC CTGCCCCCCA
  CTCCCCAGCA GCCACCCCTT AGCCAGGAGC AGCCCTTGCC AATTCCCTAC GTAAGCCTTT
  Y
  GGATGAGTTC TTTTATACAT GAGCCAAGTT GTGAGGAGCT GAGACGCTTT CAGCCGGGTG
  AAGAAAGGTG AGCGAAGACG GGCTTAGCTG AGGAAAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss52581856	NES15643392	PERLEGEN	MM_PANEL2	f	SNP	T	T		T		C	C		T
ss148463564	ENSMUSSNP3863642	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325079648	CHEV_15_98871528	CHEVERUD	SCREENING_POP	f	SNP					C			T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs48103468					SNP	T	T	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52581856	NES15643392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98938978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	727 bp distal
Gm41399	predicted gene, 41399	139 bp upstream
Gm62755	predicted gene, 62755	within coordinates
Rr509290	regulatory region 509290	569 bp distal
Rr509291	regulatory region 509291	591 bp distal
Rr509292	regulatory region 509292	within coordinates
Rr509293	regulatory region 509293	1355 bp proximal