rs48103802 SNP Detail

Summary

• ID
  rs48103802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153061003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATCCCTGG CAGTGGTGAC TGGAACACCA
  TGGAGAGCAG GAAGCAACAG TAACTATGAA TGTGAAAAGT TGGGTGATCA GAGGAAAGCG
  CTTCAGCTAA GAGACAGAGA AACCCCCGCA CTAGGTGTCA TCATAGTTGA CAGGACACAT
  R
  CACACGAAAA ACAGTCGCTA AGTTCTCGCA GATTTTGTTT ATATGACCTT AACTCCTCAG
  GACATGACAG CCACCGGGTG CTCTCGGTAG GAGTAAATGT TACTTGAAGT TTGAGTCCAA
  TAAATACCTG GGAGGCGAAA CTGTTCTTAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss60822415	NES16493715	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A		A	A	G
ss320071227	CHEV_1_155032387	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs48103802					SNP	A	A	A	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822415	NES16493715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153061003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	513 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr13130	regulatory region 13130	1998 bp proximal
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	754 bp downstream
Tssr14251	transcription start site region 14251	814 bp downstream
Tssr14252	transcription start site region 14252	845 bp downstream
Tssr14253	transcription start site region 14253	868 bp downstream
Tssr14254	transcription start site region 14254	885 bp downstream