rs48104123 SNP Detail

Summary

• ID
  rs48104123
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85415122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCCAGCACTT GGAAGGCAGA GGCAGGATTT CTGAGTTCGA
  GGCCAGCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTACACAGA GAAACCCTGT
  T
  TCAAAAAAAT TAAGAGTGTG TACTGCTCTT GTTGAATAGA GTTCAGTTCC CAGCAGTCAT
  GTCAGATGGC TACAGTTCTA GAAACTATCA CCTTTTTGCT C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145392085	ENSMUSSNP4795977	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48104123					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85415122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	457 bp distal
Cpgi20706	CpG island 20706	988 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	594 bp upstream
Rr666573	regulatory region 666573	602 bp distal
Rr666574	regulatory region 666574	1230 bp distal
Rr666575	regulatory region 666575	258 bp distal
Rr666576	regulatory region 666576	202 bp proximal
Rr666577	regulatory region 666577	729 bp proximal
Rr666578	regulatory region 666578	1299 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	776 bp upstream
Tssr78431	transcription start site region 78431	815 bp upstream
Tssr82111	transcription start site region 82111	1394 bp upstream
Tssr82112	transcription start site region 82112	922 bp upstream
Tssr82113	transcription start site region 82113	874 bp upstream
Tssr82114	transcription start site region 82114	609 bp upstream
Tssr82115	transcription start site region 82115	583 bp upstream