rs48104594 SNP Detail

Summary

• ID
  rs48104594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141430596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTTCTG GAAGAATTGC
  AACACTGCTG ATTCCTTCAT GGTGACCCAA TGAAATAATT TCAAGTCTCA GCTGTTGAGA
  GCTGTATGAT GGGCCTGTGC CAACAGGGAA GGGCTATACC CACCATGCAC CTGCCATTCC
  AATTTCACAT GTGGAGTGGT ATACTCTAAG TAAATGTAAG TTTGAATAAT TAAATTCACA
  Y
  CTCGAAATCT CAGATATATA ATACATAAGG TCATTAGACT AGACTATGAG AGTTGAAAGG
  TTTTCCTCCT AAGAGAAATA GTCCCCCAGT CCTTCACCAA GGAATGCTGT GAGATTATGT
  TGGGGCATTT AATTCAAATC CATATTTTCT GAGGAGCTAC TCTATAAAAT ACACCATGCA
  TAAAAGTATA TCCAACCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61091307	NES16613424	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48104594					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091307	NES16613424	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141430596 () rs orientation: forward

Symbol	Name	Function Class
Unc5c	unc-5 netrin receptor C	within coordinates