rs48104797 SNP Detail

Summary

• ID
  rs48104797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:20187544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGTCAG GTACTTCCTC
  CACTGTGGAG TGGATTGTGA GGACAGGCTG CCCTGAACAA GGTTAAAGAT CAGAATCAAA
  CTCTAATGCT GAACTTAACT GACAGGCTGC CAATTACAGC TTTGAAATCC TTCAAGGAAT
  TTAACGTTGT CCTAAAATAT CACACCGTAA TAACGGCTTT AGTCCCTTGA GTGGTCCTGC
  K
  TTGGTAAGAA CAGCAGGTAA ATATGTCTGC AACTTGCTTC AATTCAATCC TGGCTTCTTC
  GTTTATAATC TGATTCTGGC AGATCCAGTT AGGGCGTGAG GTTTCCGGAT CCGTACAAAA
  CTCTGAGAAA GCCTCAGGGG CCAGGCTCCG GCGCCCGGGA AGTTAAGAGC CATTCCGTGA
  CGCAGTCGCC CAGCCGATCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52162130	NES15233775	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48104797					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52162130	NES15233775	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:20187544 () rs orientation: forward

Symbol	Name	Function Class
4933406P04Rik	RIKEN cDNA 4933406P04 gene	within coordinates
Bclaf1	BCL2-associated transcription factor 1	353 bp upstream
Cpgi1349	CpG island 1349	30 bp proximal
D10Csu2	DNA segment, Chr 10, Central Connecticut State University 2	155 bp proximal
Gm67769	predicted gene, 67769	within coordinates
Rr428529	regulatory region 428529	820 bp distal
Rr428530	regulatory region 428530	181 bp proximal
Rr428531	regulatory region 428531	213 bp proximal
Rr428532	regulatory region 428532	750 bp proximal
Rr428533	regulatory region 428533	1041 bp proximal
Tssr92593	transcription start site region 92593	565 bp upstream
Tssr92594	transcription start site region 92594	663 bp upstream
Tssr92595	transcription start site region 92595	700 bp upstream
Tssr92596	transcription start site region 92596	726 bp upstream
Tssr92597	transcription start site region 92597	1157 bp upstream
Tssr96944	transcription start site region 96944	441 bp downstream