rs48105086 SNP Detail

Summary

• ID
  rs48105086
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103135265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCATTA TCATATTAGC
  CCCAATTAGT CTATCAGCTC CAGATCTGAG AGGCCCCAGG GAACAGCCAG CTGGAGTTTT
  GCTGGAGAGA TGAATCAAGC TACCCTAACT CCACCCACCA TAGGGTGTTT GCTGCGGGGG
  GGGGGGGGGG GGCGGGGGGG GGGGCTCTAG GGAAGCAACC TTAGCCTTCT CCACACTTTT
  T
  CGTGACCTTC ACCTGAAACA GCAGAGTCTG GTAAGGGGTA TGGTGTGTAT AGTCCTGAAG
  TACGAACATC AAATACAAAT ACCTAAAATT TGTGGCTCCG TAGCCCAGGC CCAGCCACTC
  TTAGTTATGG GCCTTTTAAT ATCAAGAAGA GGCAAGACTC TTTCTGCTTC CATTCCTTTT
  ACACTAATTC TAATAAGCTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147131945	ENSMUSSNP6886348	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs48105086					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103135265 () rs orientation: forward

Symbol	Name	Function Class
Ehf	ets homologous factor	1645 bp upstream
Gm74896	predicted gene, 74896	586 bp downstream
Rr45517	regulatory region 45517	935 bp proximal
Rr45518	regulatory region 45518	1335 bp proximal
Rr55313	regulatory region 55313	1664 bp distal
Tssr25460	transcription start site region 25460	1749 bp upstream
Tssr25461	transcription start site region 25461	1710 bp upstream