rs48105402 SNP Detail

Summary

• ID
  rs48105402
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:126420117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCGAGGTC CCACAGGTGG
  AAAGGGGTGT GCGTGATGCT TGGCTTGAGC AGCTTCGGAA TATAGTGAAT GCTAAATCCC
  TGTATTTTCT GCCTCGATTG TCCTGGCGCT GAGTTTCTGA GCAAAAAGGA TTCAACCCAG
  TGCCACCTCC CAGACATTCT ACCACACCCC TGTGGCTTTG GGATTCTATA AGGAATTCAA
  S
  GAGGGCAACA GTGTCATCAG CGACAGGGGG CAGAGGTGGA CCAAAAAGAA TGAAACGCTT
  AAAAGCAACC AGATCAGCAG GCACAAGAGG GTTACCCAGG GGATGAAAAA TAGGAAATAG
  CTCTGGGGAC AAGCCTGGGA GGGTGCAGGG AGCTGGCGTC CTCTTACCTG GCCTGCGGGA
  GAGCATTTTG CAGAGGGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60794534	NES16466678	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48105402					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60794534	NES16466678	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:126420117 () rs orientation: forward

Symbol	Name	Function Class
Cpgi687	CpG island 687	148 bp proximal
Nckap5	NCK-associated protein 5	within coordinates
Rr417489	regulatory region 417489	within coordinates
Rr417490	regulatory region 417490	16 bp proximal
Rr417491	regulatory region 417491	352 bp proximal
Tssr13401	transcription start site region 13401	303 bp downstream
Tssr13402	transcription start site region 13402	415 bp downstream
Tssr13403	transcription start site region 13403	460 bp downstream
Tssr13404	transcription start site region 13404	483 bp downstream
Tssr13405	transcription start site region 13405	520 bp downstream