rs48105609 SNP Detail

Summary

• ID
  rs48105609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116743829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCG GAAACGCAGC TCCGTCAGGC
  R
  CTCGGTAGCT ACAGTCCTCG TGGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323867026	CHEV_11_116714317	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48105609					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116743829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	within coordinates
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	within coordinates
Rr403147	regulatory region 403147	543 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	783 bp downstream
Tssr106001	transcription start site region 106001	429 bp downstream
Tssr106002	transcription start site region 106002	251 bp upstream
Tssr106003	transcription start site region 106003	454 bp upstream
Tssr106004	transcription start site region 106004	749 bp upstream
Tssr112001	transcription start site region 112001	1809 bp upstream
Tssr112002	transcription start site region 112002	1732 bp upstream
Tssr112003	transcription start site region 112003	1688 bp upstream
Tssr112004	transcription start site region 112004	1528 bp upstream
Tssr112005	transcription start site region 112005	850 bp upstream
Tssr112006	transcription start site region 112006	811 bp upstream
Tssr112007	transcription start site region 112007	745 bp upstream
Tssr112008	transcription start site region 112008	639 bp upstream
Tssr112009	transcription start site region 112009	547 bp upstream
Tssr112010	transcription start site region 112010	80 bp downstream